Bioinformatics
A web-based tool facilitating access to data on-the-go
Empowering metadata
Compound screening profiles
Fermentation records
Protein expression purification records
Genomic databases
Omics information
Patient medical history
Clinical trial data
Automated annotation pipeline
Any genomic data
Scalable data storage
Pathway identification
Comparative genomics
Transcriptome analysis
Metagenomics
Integrated design platform
World-class genomic toolbox
Integrated genomic analysis in a single platform
Custom visualization “apps”
Genotype to phenotype predictions
High-level statistical analytics
Advanced Machine Learning
Built for users by users
The basics
- Automated sequence annotation for both model and non-model organisms using the latest, high quality sequence annotation databases
- Genome-centric database with storage capabilities for hosting multiple sequences and genomes to enable rapid sequence retrieval and complex data mining
Integrated collection of data and tools
Data
- Metagenomes
- Microbial genomes
- Public genomes
- Eukaryotic genomes
- Metadata
- cDNAs
Tools
- Automated gene annotation
- Comparative genomics
- Transcriptomic analysis
- Pathway mining
- Integration of metadata
- SNP analysis
Genome and metagenome discovery your way
- Landing page summary. Customized visual summaries of genomes and metagenome classifications and characterization
- Powerful search. Customized data menus, genome search and regulatory element finder
- Gene discovery. Sequence annotation and browsing made easy with access to sequence classification from reputable databases
- Data analysis modules. Access to pathway annotations, BLAST sequence similarity search, and custom data analysis apps
- Genome browser. Embedded browser with gene annotation data tracks
Comparative metagenomics
- Fully integrated 16s/ITS pipeline and analysis suite
- Based on the Archetype® database of proprietary metagenomic datasets
- Easy-to-navigate keyword searches
- Perform differential abundance analysis between samples
- Uses novel, iterative assembly approaches to inform important discoveries from complex environmental datasets
Genotype to phenotype analyses
- Fully automated SNP/INDEL analysis pipeline
- Compare mutant to wild type reference genomes
- Integrate metadata to establish genotype to phenotype relationships
- Identifiy synonymous and non-synonymous mutations
- Track insertions of genes or deletions within the genome
Transcriptomics at your finger tips
- Link transcript expression to condition specific phenotype from RNA-sequencing data
- Compare transcript expression between/across conditions to identify transcripts/gene sets, regulatory elements of interest using SGI’s fully automated RNA-seq analysis pipeline
- Additional tools for differentially expressed genes, pathway/oncology annotation, and gene visualization
